7.7 – Chapter 7 – References

References and suggested readings

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Altman, D. G. (1998). Confidence intervals for the number needed to treat. BMJ, 317(7168), 1309-1312.

Bender, R. (2001). Calculating confidence intervals for the number needed to treat. Controlled clinical trials, 22(2), 102-110.

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Bewick V, Cheek L, Ball J (2003) Statistics review 8: Qualitative data – tests of association. Critical Care 8:46-53.

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Greene, W. H. (2003). Econometric analysis (5th ed.). Prentice Hall.

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Johnson, K. M. (2017). Using Bayes’ rule in diagnostic testing: a graphical explanation. Diagnosis, 4(3), 159-167.

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Michie, D., Spiegelhalter, D. J., Taylor, C. C., & Campbell, J. (1995). Machine learning, neural and statistical classification. Ellis Horwood.

Park, D. I., Ryu, S., Kim, Y. H., Lee, S. H., Lee, C. K., Eun, C. S., & Han, D. S. (2010). Comparison of guaiac-based and quantitative immunochemical fecal occult blood testing in a population at average risk undergoing colorectal cancer screening. American Journal of Gastroenterology, 105(9), 2017-2025.

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Tamhane, A. R., Westfall, A. O., Burkholder, G. A., & Cutter, G. R. (2016). Prevalence odds ratio versus prevalence ratio: choice comes with consequences. Statistics in medicine, 35(30), 5730-5735.

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Chapter 7 contents

6.12 – Chapter 6 – References

References and suggested readings

Ainsworth, C. (2015). Sex redefined. Nature, 518(7539), 288–291.

Aschengrau, A., & Seage, G. R. (2003) Essentials of Epidemiology in Public Health, second edition. Sudbury, Massachusetts: Jones and Bartlett Publishers.

Baker, M. (2016). 1,500 scientists lift the lid on reproducibility. Nature, 533(7604).

Baker D, Lidster K, Sottomayor A, Amor S. (2014) Two years later: Journals are not yet enforcing the ARRIVE Guidelines on reporting standards for pre-clinical animal studies. PLoS Biology 12:e1001756

Bergemann, T. L., & Wilson, J. (2011). Proportion statistics to detect differentially expressed genes: A comparison with log-ratio statistics. BMC Bioinformatics, 12(1), 228.

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Bumpus, H. C. (1899). The elimination of the unfit as illustrated by the introduced sparrow, Passer domesticus. Biology Lectures delivered at the Marine Biology Laboratory, Woods Hole, 1896-7, 209-226 (link to volume Google Books).

Cao, J., & Zhang, S. (2014). A Bayesian extension of the hypergeometric test for functional enrichment analysis. Biometrics, 70(1), 84-94.

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Chapter 6 contents

1.2 – References

Chapter 1 references and suggested readings

Fox, J (2005) The R Commander: A basic-statistics graphical user interface to R. Journal of Statistical Software 14(9) https://doi.org/10.18637/jss.v014.i09 .

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Posit team (2024). RStudio: Integrated Development Environment for R. Posit Software, PBC, Boston, MA. URL https://posit.co/.

R Core Team (2024). R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/.

Note: To get the citation information for R Studio, run the command RStudio.Version() in your version of R Studio. Similarly, to cite R, run the command citation() in R.

Venables, W. N., Smith, D. M., & R Development Core Team. (2009). An introduction to R. Notes on R: A Programming Environment for Data Analysis and Graphics Version 4.3.3 (2024-02-29) https://cran.r-project.org/doc/manuals/R-intro.pdf 

Chapter 1 contents

5.7 – Chapter 5 – References

Chapter 5 references and suggested readings

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Chapter 2 contents